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Commit 78e0fa7e authored by Nicolas Richart's avatar Nicolas Richart
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Merge branch 'main' of gitlab.epfl.ch:SCITAS/software-stack/scitas-software-stacks

parents 0df950ce 2c026c13
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stacks/pinot-noir/definitions_kuma_h100.yaml 0 → 100644
+ 7
− 0
View file @ 78e0fa7e
definitions:
- cuda_system_codes:
- cuda
- cudnn
- cuda_serial_codes:
- nccl
stacks/pinot-noir/packages_helvetios.yaml
+ 5
− 2
View file @ 78e0fa7e
packages:
all:
target: ["skylake_avx512"]
require:
- '~cuda'
require: ['~cuda', '~rocm']
# py-torch:
# require:
# - spec: '~cuda ~cudnn ~nccl ~rocm'
stacks/pinot-noir/packages_jed.yaml
+ 13
− 10
View file @ 78e0fa7e
......@@ -15,23 +15,32 @@ packages:
# ---------------------------------------------------------------------------
hypre:
require:
- spec: '+cuda cuda_arch=90'
- spec: '+cuda cuda_arch=90 +unified-memory'
when: '%gcc'
kokkos:
require:
- spec: '+cuda cuda_arch=90 +cuda_uvm'
- spec: '+cuda cuda_arch=90 +cuda_uvm +wrapper ~openmptarget'
when: '%gcc'
kokkos-kernels:
require:
- spec: '+cuda cuda_arch=90'
when: '%gcc'
openmpi:
require:
- spec: 'fabrics=hcoll +cuda cuda_arch=90 target=icelake'
- spec: '+cuda cuda_arch=90 target=icelake'
petsc:
require:
- spec: '+cuda cuda_arch=90'
when: '%gcc'
py-tensorflow:
require:
- spec: '+cuda cuda_arch=90 +nccl'
py-torch:
require:
- spec: '+cuda cuda_arch=90 +nccl +cudnn'
......@@ -46,17 +55,11 @@ packages:
ucx:
require:
- spec: '+xpmem +cma +rdmacm +rc +ud +dc +verbs +ib_hw_tm +vfs +gdrcopy +cuda cuda_arch=90 target=icelake ~rocm'
- spec: '+xpmem +cma +rdmacm +rc +ud +dc +verbs +ib_hw_tm +gdrcopy +cuda cuda_arch=90 target=icelake ~rocm'
# ---------------------------------------------------------------------------
# Externals
# ---------------------------------------------------------------------------
hcoll:
buildable: False
externals:
- spec: 'hcoll@4.8.3227'
prefix: /usr
pmix:
buildable: false
externals:
......
stacks/pinot-noir/packages_stack.yaml
+ 22
− 50
View file @ 78e0fa7e
packages:
all:
providers:
mpi: [openmpi, intel-oneapi-mpi]
iconv: [libiconv]
jpeg: [libjpeg]
zlib-api: [zlib-ng]
require:
- spec: "^libiconv"
when: "^iconv"
# - spec: ^intel-oneapi-mpi
# when: '%oneapi ^mpi'
# - spec: ^openmpi
# when: '%gcc ^mpi'
# - spec: ^openmpi
# when: '%aocc ^mpi'
# - spec: ^nvhpc+mpi
# when: '%nvhpc ^mpi'
# - spec: ^openblas
# when: '%gcc ^blas'
# - spec: ^openblas
# when: '%gcc ^lapack'
# - spec: ^intel-oneapi-mkl
# when: '%oneapi ^blas'
# - spec: ^intel-oneapi-mkl
# when: '%oneapi ^lapack'
# - spec: ^nvhpc+blas
# when: '%nvhpc ^blas'
# - spec: ^nvhpc+lapack
# when: '%nvhpc ^lapack'
# - spec: ^openblas
# when: '%gcc ^py-numpy'
# - spec: ^intel-oneapi-mkl
# when: '%oneapi ^py-numpy'
- spec: '+ipo'
when: '%gcc'
......@@ -85,16 +54,17 @@ packages:
hypre:
prefer:
- spec: '@2.31.0'
require:
- spec: '+unified-memory ~magma'
when: '+cuda'
- spec: '@2.31.0 ~magma'
intel-oneapi-mkl:
prefer: ['+cluster']
prefer: ['~cluster']
kokkos:
prefer: ['+openmp', '+openmptarget', '+numactl', '+memkind', '+threads', '+aggressive_vectorization']
prefer: ['+openmp', '+numactl', '+memkind', '+threads',
'+aggressive_vectorization']
kokkos-kernel:
prefer: ['+openmp', '+threads']
lammps:
require: ['build_type=Release', '+asphere', '+atc', '+body', '+class2',
......@@ -124,7 +94,7 @@ packages:
prefer: ['+mpi']
openblas:
prefer: ['threads=pthreads']
prefer: ['threads=pthreads symbol_suffix=none ~ilp64']
opencv:
prefer: ['+vtk', '+python3']
......@@ -132,8 +102,6 @@ packages:
openmpi:
require:
- spec: '@5.0.3 fabrics=ofi,ucx,verbs schedulers=slurm ~rsh +romio romio-filesystem=gpfs +internal-pmix ~memchecker'
- spec: ^ucx +cuda
when: +cuda
petsc:
require:
......@@ -146,10 +114,13 @@ packages:
when: '%gcc'
py-tensorflow:
require: ['+mpi']
require: ['+mpi', '+mkl']
py-torch:
require: ['+mpi', '~magma']
require: ['+mpi']
scotch:
prefer: ['~mpi']
suite-sparse:
require:
......@@ -160,9 +131,10 @@ packages:
ucx:
require:
- spec: +rdmacm +rc +dc +ud +cma +verbs
- spec: +gdrcopy
when: +cuda
- spec: '+rdmacm +rc +dc +ud +cma +verbs'
zlib-ng:
require: ['build_system=autotools']
# ----------------------------------------------------------------------------
# System dependencies
......
stacks/pinot-noir/spack.yaml
+ 59
− 55
View file @ 78e0fa7e
......@@ -72,7 +72,6 @@ spack:
- tk
- tmux
- trimmomatic
- valgrind
- xclip
- zlib-ng
......@@ -81,7 +80,6 @@ spack:
# -------------------------------------------------------------------------
- serial_codes:
- bwa
- boost ~mpi
- fftw +openmp ~mpi
- fftw ~openmp ~mpi
- eigen
......@@ -93,17 +91,17 @@ spack:
- jasper
- kallisto ^hdf5 ~mpi
- kokkos
- kokkos-kernels
- mafft
- metis
- muscle
- netcdf-c~mpi ^hdf5~mpi
- netcdf-fortran ^netcdf-c ~mpi ^hdf5 ~mpi
- nfft
- nfft ^fftw~mpi~openmp
- python
- scotch
- scotch ~mpi
- star
- subread
- superlu
- unblur ^fftw~mpi~openmp
- voropp
......@@ -189,8 +187,8 @@ spack:
- snakemake
- python_blas_codes:
- boost
- gmsh ~mpi +hdf5 +cgns +eigen ~opencascade +openmp ~fltk ~med
- boost ~mpi
#- gmsh ~mpi +hdf5 +cgns +eigen ~opencascade +openmp ~fltk ~med
- iq-tree
- py-biopython
- py-keras-preprocessing
......@@ -201,6 +199,7 @@ spack:
- py-pandas
- py-pybigwig
- py-xarray
- valgrind
- gcc_python_codes:
- blast-plus
......@@ -212,7 +211,7 @@ spack:
- mesa
- mummer
- node-js
- openbabel +python
- openbabel +python ^boost ~mpi
- r
- spades
- xgboost
......@@ -327,18 +326,10 @@ spack:
- matrix:
- [$compilers_specs]
- matrix:
- [$blas_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$blas_gcc]
- [$%compiler_gcc]
- matrix:
- [$mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_gcc]
- [$%compiler_gcc]
......@@ -353,16 +344,12 @@ spack:
- matrix:
- [$serial_codes]
- [$%compilers]
- [$%compiler_gcc]
- matrix:
- [$gcc_serial_codes]
- [$%compiler_gcc]
- matrix:
- [$oneapi_serial_codes]
- [$%compiler_oneapi]
- matrix:
- [$cuda_serial_codes]
- [$%compiler_gcc]
......@@ -372,11 +359,6 @@ spack:
- [$^blas_gcc]
- [$%compiler_gcc]
- matrix:
- [$blas_codes]
- [$^blas_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$gcc_blas_codes]
- [$^blas_gcc]
......@@ -392,34 +374,18 @@ spack:
- [$^python_gcc]
- [$%compiler_gcc]
- matrix:
- [$python_codes]
- [$^python_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$python_blas_codes]
- [$^python_gcc]
- [$^blas_gcc]
- [$%compiler_gcc]
- matrix:
- [$python_blas_codes]
- [$^python_oneapi]
- [$^blas_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$gcc_python_blas_codes]
- [$^python_gcc]
- [$^blas_gcc]
- [$%compiler_gcc]
- matrix:
- [$mpi_codes]
- [$^mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_codes]
- [$^mpi_gcc]
......@@ -430,25 +396,12 @@ spack:
- [$^mpi_gcc]
- [$%compiler_gcc]
- matrix:
- [$mpi_blas_codes]
- [$^blas_oneapi]
- [$^mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_blas_codes]
- [$^blas_gcc]
- [$^mpi_gcc]
- [$%compiler_gcc]
- matrix:
- [$mpi_blas_python_codes]
- [$^blas_oneapi]
- [$^mpi_oneapi]
- [$^python_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_blas_python_codes]
- [$^blas_gcc]
......@@ -463,6 +416,57 @@ spack:
- [$^python_gcc]
- [$%compiler_gcc]
# --------------------------------------------------------------------------
- matrix:
- [$serial_codes]
- [$%compiler_oneapi]
- matrix:
- [$blas_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$oneapi_serial_codes]
- [$%compiler_oneapi]
- matrix:
- [$blas_codes]
- [$^blas_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$python_codes]
- [$^python_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$python_blas_codes]
- [$^python_oneapi]
- [$^blas_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_codes]
- [$^mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_blas_codes]
- [$^blas_oneapi]
- [$^mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_blas_python_codes]
- [$^blas_oneapi]
- [$^mpi_oneapi]
- [$^python_oneapi]
- [$%compiler_oneapi]
view: false
# default:
# root: /stack/packages/
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