spack.yaml

spack:
  include:
      - compiler_definitions.yaml

      - packages_stack.yaml
      - packages_env.yaml

      - modules_stack.yaml
      - modules_env.yaml

      - definitions_env.yaml

      - config_stack.yaml

  definitions:
    # -------------------------------------------------------------------------
    # PE definition
    # -------------------------------------------------------------------------
    - mpi_gcc:
        - openmpi@5.0.3

    - mpi_oneapi:
        - intel-oneapi-mpi@2021.12.1

    - blas_gcc:
        - openblas@0.3.26

    - blas_oneapi:
        - intel-oneapi-mkl@2024.1.0

    - python_gcc:
        - python@3.11.7

    - python_oneapi:
        - python@3.11.7

    # -------------------------------------------------------------------------
    # Core packages
    # -------------------------------------------------------------------------
    - core_codes:
        - bzip2
        - cmake
        - emacs +tls
        - fastqc
        - fio
        - git
        - git-lfs
        - gmp
        - gnuplot
        - gzip
        - imagemagick +ghostscript
        - intel-oneapi-advisor
        - intel-oneapi-inspector
        - intel-oneapi-vtune
        - libarchive
        - libjpeg-turbo
        - libpng
        - libtiff
        - libxml2
        - lmod
        - mpfr
        - neovim
        - ninja
        - parallel
        - picard
        - rclone
        - rust
        - sbt
        - sratoolkit
        - subversion