spack:
include:
- compiler_definitions.yaml
- packages_stack.yaml
- packages_env.yaml
- modules_stack.yaml
- definitions_env.yaml
- config_stack.yaml
definitions:
# -------------------------------------------------------------------------
# PE definition
# -------------------------------------------------------------------------
- mpi_gcc:
- openmpi@5.0.3
- mpi_oneapi:
- intel-oneapi-mpi@2021.12.1
- blas_gcc:
- openblas@0.3.26
- blas_oneapi:
- intel-oneapi-mkl@2024.1.0
- python_gcc:
- python@3.11.7
- python_oneapi:
- python@3.11.7
# -------------------------------------------------------------------------
# Core packages
# -------------------------------------------------------------------------
- core_codes:
- bzip2
- cmake
- emacs +tls
- fastqc
- fio
- git
- git-lfs
- gmp
- gnuplot
- gzip
- imagemagick +ghostscript
- intel-oneapi-advisor
- intel-oneapi-inspector
- intel-oneapi-vtune
- libarchive
- libjpeg-turbo
- libpng
- libtiff
- libxml2
- lmod
- mpfr
- neovim
- parallel
- picard
- rclone
- sbt
- sratoolkit
- subversion
- tar
- tcl
- tk
- tmux
- trimmomatic
- valgrind
- xclip
- zlib-ng
# -------------------------------------------------------------------------
# Serial codes
# -------------------------------------------------------------------------
- serial_codes:
- bwa
- fftw +openmp ~mpi
- fftw ~openmp ~mpi
- gsl
#- hdf5 ~mpi
- hisat2
- htslib
- intel-oneapi-tbb
- jasper
- mafft
- metis
- muscle
- nfft
- python
- scotch
- star
- subread
- superlu
- voropp
- gcc_serial_codes:
- hwloc
- libxc
- stacks
# -------------------------------------------------------------------------
# Empty to specialize in environments
# -------------------------------------------------------------------------
- cuda_system_codes: []
# -------------------------------------------------------------------------
# Parallel codes
# -------------------------------------------------------------------------
- mpi_codes:
- osu-micro-benchmarks +graphing
- hdf5@1.14.3 +mpi
- parmetis
- blas_mpi_codes:
- hypre@2.31.0
- mumps@5.6.2
- superlu-dist@8.2.1
- blas_mpi_python_codes:
- petsc@3.21.1 +mpi
# -------------------------------------------------------------------------
# Generic definitions
# -------------------------------------------------------------------------
- mpis:
- $mpi_oneapi
- $mpi_gcc
specs:
- matrix:
- [$compilers_specs]
- matrix:
- [$blas_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$blas_gcc]
- [$%compiler_gcc]
- matrix:
- [$mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_gcc]
- [$%compiler_gcc]
- matrix:
- [$core_codes]
- [$%system_compiler]
- matrix:
- [$cuda_system_codes]
- [$%system_compiler]
- matrix:
- [$serial_codes]
- [$%compilers]
- matrix:
- [$gcc_serial_codes]
- [$%compiler_gcc]
- matrix:
- [$mpi_codes]
- [$^mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$mpi_codes]
- [$^mpi_gcc]
- [$%compiler_gcc]
- matrix:
- [$blas_mpi_codes]
- [$^blas_oneapi]
- [$^mpi_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$blas_mpi_codes]
- [$^blas_gcc]
- [$^mpi_gcc]
- [$%compiler_gcc]
- matrix:
- [$blas_mpi_python_codes]
- [$^blas_oneapi]
- [$^mpi_oneapi]
- [$^python_oneapi]
- [$%compiler_oneapi]
- matrix:
- [$blas_mpi_python_codes]
- [$^blas_gcc]
- [$^mpi_gcc]
- [$^python_gcc]
- [$%compiler_gcc]
view: false
# default:
# root: /stack/packages/