From bcd7008fc2e78f05a214be92565b7c8d28d363a7 Mon Sep 17 00:00:00 2001
From: Nicolas Richart <nicolas.richart@epfl.ch>
Date: Sun, 28 Jul 2024 01:16:47 +0200
Subject: [PATCH] Reducing hdf5 (no intel-oneapi-mpi)
---
stacks/pinot-noir/packages_stack.yaml | 1 -
stacks/pinot-noir/spack.yaml | 6 +++---
2 files changed, 3 insertions(+), 4 deletions(-)
diff --git a/stacks/pinot-noir/packages_stack.yaml b/stacks/pinot-noir/packages_stack.yaml
index d45321c..9aab512 100644
--- a/stacks/pinot-noir/packages_stack.yaml
+++ b/stacks/pinot-noir/packages_stack.yaml
@@ -52,7 +52,6 @@ packages:
hdf5:
prefer:
- - spec: '+mpi'
- spec: '@1.14.3'
require:
- spec: '+hl +threadsafe +szip +cxx +fortran'
diff --git a/stacks/pinot-noir/spack.yaml b/stacks/pinot-noir/spack.yaml
index d1f8d40..533d149 100644
--- a/stacks/pinot-noir/spack.yaml
+++ b/stacks/pinot-noir/spack.yaml
@@ -197,7 +197,7 @@ spack:
- py-pandas
- py-pybigwig
- py-xarray
- - valgrind
+ - valgrind ~~mpi
- gcc_python_codes:
- blast-plus
@@ -216,14 +216,14 @@ spack:
- xgboost
- gcc_python_blas_codes:
- - caffe +python
+ - caffe +python ^hdf5~mpi
- gdb +tui +source-highlight +xz
- openbabel ++python ^boost ~~mpi
- polymake ^cddlib@0.94h
- py-cryolobm
- py-deeptools
- py-h5py ~~mpi
- - py-pymol
+ - py-pymol ^hdf5~mpi
- py-scikit-learn
- py-scipy
#- py-statsmodels
--
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