diff --git a/stacks/pinot-noir/config.json b/stacks/pinot-noir/config.json index 6ce0f2cc038ec01c17cee70c7c8c73463f064ed6..bc5271ee7fb7db87f7241b528ffeb284c21237ea 100644 --- a/stacks/pinot-noir/config.json +++ b/stacks/pinot-noir/config.json @@ -51,18 +51,6 @@ "compiler": "gcc", "spec": "gcc@12.3.0 %gcc@11.2.1", "version": "12.3.0" - }, - "nvhpc": { - "compiler": "nvhpc", - "spec": "nvhpc +blas +lapack +mpi@24.3 %gcc@11.2.1", - "version": "24.3", - "constraint": "env['environment'] in ['kuma_h100', 'kuma_l40s', 'izar']" - }, - "aocc": { - "compiler": "aocc", - "spec": "aocc +license-agreed@4.2.0 %gcc@11.2.1", - "version": "4.2.0", - "constraint": "env['environment'] in ['kuma_h100', 'kuma_l40s']" } }, "system_packages": [ @@ -81,19 +69,23 @@ "findutils", "flex", "font-util", + "fontconfig", "freetype", "gawk", "gdbm", "gettext", "git", + "glib", "gmake", "gmp", "gnuplot", + "gperf", "hcoll", "help2man", "libaec", "libedit", "libevent", + "libffi", "libfuse", "libidn2", "libpciaccess", @@ -103,6 +95,7 @@ "libtool", "libunistring", "libuuid", + "libxct", "libxml2", "lz4", "m4", diff --git a/stacks/pinot-noir/packages.yaml b/stacks/pinot-noir/packages.yaml index fbb850507f94064cdc00500b6a4c638decaf9880..82f19961834d29e7f6d9088fb0f45cdc7e77614c 100644 --- a/stacks/pinot-noir/packages.yaml +++ b/stacks/pinot-noir/packages.yaml @@ -9,6 +9,11 @@ packages: mpi: [openmpi, intel-oneapi-mpi] jpeg: [libjpeg] zlib-api: [zlib-ng] + pkgconfig: [pkgconf] + szip: [libaec] + unwind: [libunwind] + uuid: [libuuid] + zlib-api: [zlib-ng+compat] glibc: prefer: ['%gcc@11.2.1'] diff --git a/stacks/pinot-noir/packages_stack.yaml b/stacks/pinot-noir/packages_stack.yaml index fca8c858142a2d6d9a084219fff80b507321de11..ffe6e7a654275d9cf4e9cc8de60531a4d208a85e 100644 --- a/stacks/pinot-noir/packages_stack.yaml +++ b/stacks/pinot-noir/packages_stack.yaml @@ -3,7 +3,6 @@ packages: require: - spec: '+ipo' when: '%gcc' - # ---------------------------------------------------------------------------- # Requirements # ---------------------------------------------------------------------------- @@ -22,12 +21,19 @@ packages: '+system', '~taggedlayout', '+test', '+thread', '+timer', '~type_erasure', '~versionedlayout', '+wave', '+exception'] + cairo: + # ~X avoids a dependency to python (only prefer due to gtkplus) + prefer: ['~X'] + cuda: require: - spec: '@12.4.0' - spec: '+allow-unsupported-compilers' when: '%oneapi' + emacs: + prefer: ['+tls', '+X', 'toolkit=athena'] + fenics-dolfinx: require: ['+slepc'] @@ -73,12 +79,17 @@ packages: require: - spec: 'fabrics=mlx,mrail,psm3,verbs,udp,tcp,sockets,shm' - llvm: - prefer: ['~clang'] - libxcb: require: ['+use_spack_interpreter'] + libxml2: + # python depends on libxml2 this avoid cyclic dependency + require: ['~python'] + + llvm: + # avoid compiler in lmod module + prefer: ['~clang'] + mesa: require: ['~llvm', '+opengl', '+opengles', '+osmesa'] @@ -98,16 +109,22 @@ packages: require: - spec: '@5.0.3 fabrics=ofi,ucx,verbs schedulers=slurm ~rsh +romio romio-filesystem=gpfs +internal-pmix ~memchecker' + pango: + prefer: [~X] + petsc: require: - spec: '+hypre +mumps +saws +scalapack +mpi +suite-sparse +kokkos' python: require: - - spec: '+ssl +tkinter' + - spec: '+ssl +tkinter +crypt +bz2 +pyexpat +libxml2 +ctypes +uuid' - spec: '+optimizations' when: '%gcc' + py-numpy: + prefer: ['@1.26.4'] + py-tensorflow: require: ['+mpi', '+mkl'] diff --git a/stacks/pinot-noir/spack.yaml b/stacks/pinot-noir/spack.yaml index c3146e1de2bddf2ffac336186602e3915667bdf9..7c13e5f9dd575051f50333b3a36cfd29f3a82c65 100644 --- a/stacks/pinot-noir/spack.yaml +++ b/stacks/pinot-noir/spack.yaml @@ -40,7 +40,7 @@ spack: - core_codes: - bzip2 - cmake - - emacs +tls + - emacs - fastqc - fio - git @@ -48,7 +48,6 @@ spack: - gmp - gnuplot - gzip - - imagemagick +ghostscript - intel-oneapi-advisor - intel-oneapi-inspector - intel-oneapi-vtune @@ -112,6 +111,7 @@ spack: - ffmpeg +libx264 - glpk+gmp - hwloc + - imagemagick +ghostscript - intel-oneapi-mkl - libxc - ncview ^hdf5 ~mpi ^netcdf-c ~mpi ~parallel-netcdf